PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.52102s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 328aa    MW: 36617 Da    PI: 8.2153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.52102s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12154200455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A+++Ik+Lq
  Araha.52102s0003.1.p 154 DHILAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAIKHIKYLQ 200
                           5899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10154200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17154213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-17155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-12155203No hitNo description
SMARTSM003533.2E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MATTMNVFST KWSTELDIED YSIIHQYHMN SLVGDVPQSL SSLDDTTTCY NFDASCNDDL  60
VEEKPSKILK TTHISPKLHP FSSSNPPSPK DQPSSRILSF EKTGLNVMNH NSPNLIFSTK  120
EEEIGLPNQK KTELIIRGTK RAQPLTRSQS NAQDHILAER KRREKLTQRF VALSALVPGL  180
KKMDKASVLG DAIKHIKYLQ ESVKEYEEQK KEKTMVVVKK SQLVLDENHQ SSSPSLNCDF  240
SSSNLPEIEV RVSGKDVLIK ILCEKQKGNV IKIMGEIEKL GLSITNSIVL PFGPAFDISI  300
IAQKNNNFDM KIEDVVKNLS CGLSKLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472271.10.0PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-169BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A078DJZ10.0A0A078DJZ1_BRANA; BnaC04g35300D protein
STRINGBra030210.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-170bHLH family protein